PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P04180_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 226aa    MW: 25063.5 Da    PI: 5.7542
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P04180_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.12.1e-1063110454
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            ++  rE+ RRd++N++f+eL  +l +    + +K +Ka+iL  A + + +L
  GSMUA_Achr7P04180_001  63 SKACREKMRRDKLNDRFSELSLILDPG---RTPKSDKASILSDAARVLVQL 110
                            6789****************9888887...99************9887666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.51559110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.80E-862115No hitNo description
PfamPF000104.5E-863110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-1264132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-765116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.15E-1165133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MESNSIDDYW VDGGGSDAEL RCAIESFCDM VPTTGVGIEE AYGVELTSLK KRARDDSTTG  60
LKSKACREKM RRDKLNDRFS ELSLILDPGR TPKSDKASIL SDAARVLVQL KADAQELKES  120
NDKLQETIKD LKVEKNELRD EKMKLKADKE TLEQQVKAIS MAPSGFMPHP LAYHPAAAPT  180
TFSPHVQAPS NKAAHFPAYP GMAMWQWLPP AVMDTTQDSK LWPPNA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009408169.11e-168PREDICTED: transcription factor ILR3-like isoform X1
SwissprotQ9FH372e-60ILR3_ARATH; Transcription factor ILR3
TrEMBLM0TEK81e-168M0TEK8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P04180_0011e-168(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81733646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.13e-58bHLH family protein